Index

Symbols

--2d-histograms nsphere_plot command line option --animations nsphere_plot command line option --aniso-beta nsphere command line option --aniso-betascale nsphere command line option --aniso-factor nsphere command line option --convergence-tests nsphere_plot command line option --cutoff-factor nsphere command line option --distributions nsphere_plot command line option --dtwrite nsphere command line option --end nsphere_animations command line option nsphere_plot command line option --energy-plots nsphere_plot command line option --extend-file nsphere command line option --falloff-factor nsphere command line option --fps nsphere_animations command line option nsphere_plot command line option --ftidal nsphere command line option --halo-mass nsphere command line option --help nsphere command line option nsphere_plot command line option --init-cond-seed nsphere command line option --load-seeds nsphere command line option --log nsphere command line option nsphere_2d_histograms command line option nsphere_animations command line option nsphere_distributions command line option nsphere_plot command line option --lvals-target nsphere command line option --master-seed nsphere command line option --method nsphere command line option --methodtag nsphere command line option --no-animations nsphere_plot command line option --no-convergence-tests nsphere_plot command line option --no-distributions nsphere_plot command line option --no-energy-plots nsphere_plot command line option --no-histograms nsphere_plot command line option --no-phase-comparison nsphere_plot command line option --no-phase-space nsphere_plot command line option

--no-profile-plots nsphere_plot command line option --no-trajectory-plots nsphere_plot command line option --nout nsphere command line option --nparticles nsphere command line option --ntimesteps nsphere command line option --paced nsphere_plot command line option --phase-comparison nsphere_plot command line option --phase-space nsphere_plot command line option --profile nsphere command line option --profile-plots nsphere_plot command line option --readinit nsphere command line option --restart nsphere command line option --restart-file nsphere command line option --save nsphere command line option --scale-radius nsphere command line option --sidm nsphere command line option --sidm-kappa nsphere command line option --sidm-mode nsphere command line option --sidm-seed nsphere command line option --sim-extend nsphere command line option --sim-restart nsphere command line option --snapshot-buffer nsphere command line option --sort nsphere command line option --start nsphere_animations command line option nsphere_plot command line option --step nsphere_animations command line option nsphere_plot command line option --suffix nsphere_2d_histograms command line option nsphere_animations command line option nsphere_distributions command line option nsphere_plot command line option --tag nsphere command line option --tfinal nsphere command line option --trajectory-plots nsphere_plot command line option --writeinit nsphere command line option -h nsphere_plot command line option

_

__init__() (nsphere_plot.Configuration method)

A

add_snapshot_to_double_buffer (C++ function) adjust_ntimesteps (C++ function) allocate_double_precision_buffers (C++ function) allocate_trajectory_buffers (C++ function)

append_all_particle_data_chunk_to_file (C++ function) append_all_particle_ids_to_file (C++ function) append_all_particle_phi_data_chunk_to_file (C++ function) append_all_particle_scatter_counts_to_file (C++ function)

B

branchless_swap (C macro)

C

calculate_global_max_values() (in module nsphere_plot) calculate_reasonable_vmax() (in module nsphere_plot) calculate_system_energies (C++ function) check_and_warn_negative_fQ (C++ function) check_strict_monotonicity (C++ function) chosen (C++ member) CLEAN_EXIT (C macro) CLEAN_LOCAL_EXIT (C macro) cleanup_all_particle_data (C++ function) cleanup_trajectory_buffers (C++ function) clear_line() (in module nsphere_plot) cmp (C macro), [1], [2], [3] cmp_LAI (C++ function) CMPFUNC (C++ type) compare_pair_by_first_element (C++ function)

compare_partdata_by_rad (C++ function) compare_particles (C++ function) Configuration (class in nsphere_plot) cored_potential_params (C++ struct) cored_potential_params::M (C++ member) cored_potential_params::rc (C++ member) cored_potential_wrapper (C++ function) correct_negative_fE_and_rebuild_IE (C++ function) create_backup_file (C++ function) create_density_animation() (in module nsphere_plot) create_mass_animation() (in module nsphere_plot) create_psi_animation() (in module nsphere_plot) crossproduct (C++ function) cube (C macro) CUTOFF_FACTOR_CORED_DEFAULT (C macro) CUTOFF_FACTOR_NFW_DEFAULT (C macro)

D

dbg_approxE (C++ member) dbg_count (C++ member) dbg_dynE (C++ member) dbg_kinE (C++ member) dbg_potE (C++ member) dbg_radius (C++ member) dbg_time (C++ member) debug_direct_convolution (C++ member) DEBUG_MAX_STEPS (C macro) DEBUG_PARTICLE_ID (C macro) density_derivative_om_cored (C++ function) density_derivative_om_nfw (C++ function) density_hernquist (C++ function) df_hernquist_aniso (C++ function) direct_gaussian_convolution (C++ function) display_configuration_summary() (in module nsphere_plot)

doAdaptiveFullLeap (C++ function) doAdaptiveFullLeviCivita (C++ function) doLeviCivitaLeapfrog (C++ function) doMicroLeapfrog (C++ function) doMicroLeviCivita (C++ function) doReadInit (C++ member) doSingleTauStepAdaptiveLeviCivita (C++ function) dotproduct (C++ function) double_cmp (C++ function) doWriteInit (C++ member) drhodr (C++ function) drhodr_func_t (C++ type) drhodr_hernquist (C++ function) drhodr_nfw_func_t (C++ type) drhodr_om_hernquist (C++ function) drhodr_profile_nfwcutoff (C++ function) dRhoDtaufun (C++ function)

E

effective_angular_force (C++ function) effective_angular_force_rho_v (C++ function) ensure_cursor_visible() (in module nsphere_plot)

errorAndExit (C++ function) evaluatespline (C++ function) evaluatespline_with_boundary (C++ function)

F

FALLOFF_FACTOR_NFW_DEFAULT (C macro) fE_integrand_params_hernquist_t (C++ struct) fE_integrand_params_hernquist_t::accel_M_of_r (C++ member) fE_integrand_params_hernquist_t::accel_r_of_Psi (C++ member) fE_integrand_params_hernquist_t::const_G_universal (C++ member) fE_integrand_params_hernquist_t::E_current_shell (C++ member) fE_integrand_params_hernquist_t::hernquist_a_scale (C++ member) fE_integrand_params_hernquist_t::hernquist_normalization (C++ member) fE_integrand_params_hernquist_t::Psimax_global (C++ member) fE_integrand_params_hernquist_t::Psimin_global (C++ member) fE_integrand_params_hernquist_t::spline_M_of_r (C++ member) fE_integrand_params_hernquist_t::spline_r_of_Psi (C++ member) fE_integrand_params_hernquist_t::use_om (C++ member) fE_integrand_params_NFW_t (C++ struct) fE_integrand_params_NFW_t::accel_M_of_r (C++ member) fE_integrand_params_NFW_t::accel_r_of_Psi (C++ member) fE_integrand_params_NFW_t::const_G_universal (C++ member) fE_integrand_params_NFW_t::E_current_shell (C++ member) fE_integrand_params_NFW_t::profile_falloff_C_const (C++ member) fE_integrand_params_NFW_t::profile_nt_norm_const (C++ member) fE_integrand_params_NFW_t::profile_rc_const (C++ member) fE_integrand_params_NFW_t::Psimax_global (C++ member) fE_integrand_params_NFW_t::Psimin_global (C++ member) fE_integrand_params_NFW_t::spline_M_of_r (C++ member) fE_integrand_params_NFW_t::spline_r_of_Psi (C++ member) fE_integrand_params_NFW_t::use_om (C++ member)

fEintegrand (C++ function) fEintegrand_hernquist (C++ function) fEintegrand_nfw (C++ function) fEintegrand_params (C++ struct) fEintegrand_params::E (C++ member) fEintegrand_params::massarray (C++ member) fEintegrand_params::rofPsiarray (C++ member) fEintegrand_params::splinemass (C++ member) fEintegrand_params::splinePsi (C++ member) fEintegrand_params::use_om (C++ member) fft_gaussian_convolution (C++ function) filter_finite_rows() (in module nsphere_plot) finalize_debug_energy_output (C++ function) finalize_energy_diagnostics (C++ function) find_last_common_complete_snapshot (C++ function) find_last_processed_snapshot (C++ function) find_minimum_useful_radius (C++ function) find_project_root() (in module nsphere_plot) flush_double_buffer_to_disk (C++ function) flush_trajectory_buffers (C++ function) forceLCfun (C++ function) format_file_size (C++ function) fprintf_bin (C++ function) fprintf_bin_dbl (C++ function) fscanf_bin (C++ function) fscanf_bin_dbl (C++ function) FUNC (C macro), [1], [2], [3], [4], [5], [6], [7]

G

g_active_halo_mass (C++ member) g_anisotropy_beta (C++ member) g_anisotropy_beta_provided (C++ member) g_attempt_load_seeds (C++ member) g_benchmark_count (C++ member) G_CONST (C macro) g_cored_profile_halo_mass (C++ member) g_cored_profile_rc (C++ member) g_cored_profile_rmax_factor (C++ member) g_current_best_sort (C++ member) g_current_timestep_scatter_counts (C++ member) g_cutoff_factor_param (C++ member) g_cutoff_factor_param_provided (C++ member) g_dbl_buf_count (C++ member) g_dbl_buf_current_slot (C++ member) g_dbl_buf_L (C++ member) g_dbl_buf_npts (C++ member) g_dbl_buf_phi (C++ member) g_dbl_buf_R (C++ member) g_dbl_buf_Rank (C++ member) g_dbl_buf_Vrad (C++ member) g_default_max_threads (C++ member) g_defaultSortAlg (C++ member) g_density_derivative_func (C++ member) g_density_derivative_nfw_func (C++ member) g_doAllParticleData (C++ member) g_doDebug (C++ member) g_doDynPsi (C++ member) g_doDynRank (C++ member) g_doRestart (C++ member) g_doRestartForce (C++ member) g_doSimExtend (C++ member) g_doSimRestart (C++ member) g_doSimRestartCheckOnly (C++ member) g_E_buf (C++ member) g_E_init_vals (C++ member) g_enable_logging (C++ member) g_enable_sidm_scattering (C++ member) g_energy_file (C++ member) g_energy_snapshots_loaded (C++ member) g_extend_file_source (C++ member) g_falloff_factor_param (C++ member) g_falloff_factor_param_provided (C++ member) g_file_suffix (C++ member) g_halo_mass_param (C++ member) g_halo_mass_param_provided (C++ member) g_hybrid_p_cores (C++ member) g_initial_cond_seed (C++ member) g_initial_cond_seed_filename_base (C++ member) g_initial_cond_seed_provided (C++ member) g_insertion_wins (C++ member) g_L_buf (C++ member) g_L_init_vals (C++ member) g_l_target_value (C++ member) g_lowestL_E_buf (C++ member) g_lowestL_file (C++ member) g_lowestL_L_buf (C++ member) g_lowestL_r_buf (C++ member) g_master_seed (C++ member) g_master_seed_provided (C++ member) g_mu_buf (C++ member) g_nfw_profile_falloff_factor (C++ member) g_nfw_profile_halo_mass (C++ member) g_nfw_profile_rc (C++ member) g_nfw_profile_rmax_norm_factor (C++ member) g_om_aniso_factor_provided (C++ member) g_om_anisotropy_radius (C++ member)

g_om_ra_scale_factor (C++ member) g_particle_scatter_state (C++ member) g_precalc_force_const (C++ member) g_profile_type_str (C++ member) g_profile_type_str_provided (C++ member) g_quadsort_wins (C++ member) g_radix_wins (C++ member) g_restart_file_override (C++ member) g_restart_initial_timestep (C++ member) g_restart_mode_active (C++ member) g_restart_snapshots_is_count (C++ member) g_rng (C++ member) g_scale_radius_param (C++ member) g_scale_radius_param_provided (C++ member) g_sidm_execution_mode (C++ member) g_sidm_kappa (C++ member) g_sidm_kappa_provided (C++ member) g_sidm_max_interaction_range (C++ member) g_sidm_seed (C++ member) g_sidm_seed_filename_base (C++ member) g_sidm_seed_provided (C++ member) g_single_traj_file (C++ member) g_sort_call_count (C++ member) g_sort_columns_buffer (C++ member) g_sort_columns_buffer_npts (C++ member) g_time_buf (C++ member) g_time_snapshots (C++ member) g_total_E (C++ member) g_total_insertion_time (C++ member) g_total_KE (C++ member) g_total_PE (C++ member) g_total_quadsort_time (C++ member) g_total_radix_time (C++ member) g_total_sidm_scatters (C++ member) g_traj_file (C++ member) g_trajectories_buf (C++ member) g_trajectory_buffer_index (C++ member) g_trajectory_buffer_size (C++ member) g_use_graph_coloring_sidm (C++ member) g_use_hernquist_aniso_profile (C++ member) g_use_hernquist_numerical (C++ member) g_use_nfw_profile (C++ member) g_use_numerical_isotropic (C++ member) g_use_om_profile (C++ member) g_velocities_buf (C++ member) gaussian_convolution (C++ function) generate_all_1D_animations() (in module nsphere_plot) generate_all_2d_histograms() (in module nsphere_plot) generate_all_energy_plots() (in module nsphere_plot) generate_comparison_plot() (in module nsphere_plot) generate_convergence_test_plots() (in module nsphere_plot) generate_ics_hernquist_anisotropic (C++ function) generate_initial_phase_histogram() (in module nsphere_plot) generate_phase_space_animation() (in module nsphere_plot) generate_rank_histogram() (in module nsphere_plot) generate_sorted_energy_plot() (in module nsphere_plot) generate_unsorted_energy_plot() (in module nsphere_plot) get_available_disk_space (C++ function) get_deterministic_rand (C++ function) get_file_prefix() (in module nsphere_plot) get_mem_usage_mb() (in module nsphere_plot) get_separator_line() (in module nsphere_plot) get_snapshot_number() (in module nsphere_plot) get_sort_description (C++ function) get_suffixed_filename (C++ function) gravitational_force (C++ function) gravitational_force_rho_v (C++ function)

H

HALO_MASS (C macro) HALO_MASS_NFW (C macro) handle_sidm_step (C++ function) head_branchless_merge (C macro) hernquist_params (C++ struct) hernquist_params::a (C++ member) hernquist_params::M (C++ member)

hernquist_potential_params (C++ struct) hernquist_potential_params::a (C++ member) hernquist_potential_params::M (C++ member) hernquist_potential_wrapper (C++ function) hide_cursor() (in module nsphere_plot) HIST_NBINS (C macro) hyperg_2F1_safe (C++ function)

I

ID_block (C++ member) IF_ALL_PART (C macro) IF_DEBUG (C macro) IF_DYNPSI (C macro) IF_DYNRANK (C macro)

imin (C macro) insertion_parallel_sort (C++ function) insertion_sort (C++ function) insertion_sort_sub (C++ function) isFloat (C++ function) isInteger (C++ function)

K

kmsec_to_kpcmyr (C macro)

L

L_block (C++ member) LAndIndex (C++ struct) LAndIndex::idx (C++ member) LAndIndex::L (C++ member) LAndIndex::sign (C++ member) Lcompare (C++ member) load_chosen_particles (C++ function) load_existing_energy_diagnostics (C++ function)

load_from_double_buffer (C++ function) load_partial_file() (in module nsphere_plot) load_partial_file_10() (in module nsphere_plot) load_partial_file_bin() (in module nsphere_plot) load_particles_from_restart (C++ function) load_specific_columns_bin() (in module nsphere_plot) log_message (C++ function) log_message() (in module nsphere_plot) log_plot_saved() (in module nsphere_plot)

M

main() (in module nsphere_plot) make_threevector (C++ function) mass_integrand_hernquist (C++ function) massintegrand (C++ function) massintegrand_hernquist (C++ function)

massintegrand_profile_nfwcutoff (C++ function) mix64 (C++ function) module nsphere_plot MYBINIO_H (C macro)

N

need_to_process_rank_files() (nsphere_plot.Configuration method) nfw_potential_params (C++ struct) nfw_potential_params::falloff (C++ member) nfw_potential_params::M (C++ member) nfw_potential_params::normalization (C++ member) nfw_potential_params::Phi0 (C++ member) nfw_potential_params::rs (C++ member) nfw_potential_wrapper (C++ function) nlowest (C++ member) normalization (C++ member) ns_quadsort_extended (C++ function) ns_sort_array (C macro) ns_sort_extended (C macro) ns_sort_prim (C macro) ns_sort_size (C macro) nsphere command line option --aniso-beta --aniso-betascale --aniso-factor --cutoff-factor --dtwrite --extend-file --falloff-factor --ftidal --halo-mass --help --init-cond-seed --load-seeds --log --lvals-target --master-seed --method --methodtag --nout --nparticles --ntimesteps --profile --readinit --restart --restart-file --save --scale-radius --sidm --sidm-kappa --sidm-mode --sidm-seed --sim-extend --sim-restart --snapshot-buffer --sort --tag --tfinal --writeinit

nsphere_2d_histograms command line option --log --suffix nsphere_animations command line option --end --fps --log --start --step --suffix nsphere_distributions command line option --log --suffix nsphere_plot module nsphere_plot command line option --2d-histograms --animations --convergence-tests --distributions --end --energy-plots --fps --help --log --no-animations --no-convergence-tests --no-distributions --no-energy-plots --no-histograms --no-phase-comparison --no-phase-space --no-profile-plots --no-trajectory-plots --paced --phase-comparison --phase-space --profile-plots --start --step --suffix --trajectory-plots -h NUM_MINI_SUBSTEPS_BOOTSTRAP (C macro) num_traj_particles (C++ member)

O

om_mu_integral_params (C++ struct) om_mu_integral_params::fofQ_accel (C++ member) om_mu_integral_params::fofQ_interp (C++ member) om_mu_integral_params::I_array (C++ member) om_mu_integral_params::Psi_rf_codes (C++ member) om_mu_integral_params::Psimax (C++ member)

om_mu_integral_params::Psimin (C++ member) om_mu_integral_params::Q_array (C++ member) om_mu_integral_params::r_over_ra_sq (C++ member) om_mu_integral_params::v_sq (C++ member) om_mu_integrand (C++ function) only_specific_visualizations() (nsphere_plot.Configuration method)

P

parallel_radix_sort (C++ function) PARALLEL_SORT_DEFAULT_SECTIONS (C++ member) PARALLEL_SORT_MIN_CHUNK_SIZE_THRESHOLD (C++ member) PARALLEL_SORT_MIN_CORRECTNESS_OVERLAP (C++ member) PARALLEL_SORT_OVERLAP_DIVISOR (C++ member) PARALLEL_SORT_SECTIONS_PER_THREAD (C++ member) parity_merge_four (C macro) parity_merge_two (C macro) parse_arguments() (in module nsphere_plot) parse_nsphere_filename (C++ function) parseSaveArgs (C++ function) PartData (C++ struct) PartData::angmom (C++ member) PartData::original_index (C++ member) PartData::rad (C++ member) PartData::rank (C++ member) PartData::vrad (C++ member) perform_scatter_update (C++ function) perform_sidm_scattering_parallel_graphcolor (C++ function) perform_sidm_scattering_serial (C++ function) phase_space_process_rank_file() (in module nsphere_plot) phi_block (C++ member) PI (C macro) plot_angular_momentum_time() (in module nsphere_plot) plot_combined_histogram_from_file() (in module nsphere_plot) plot_convergence_test() (in module nsphere_plot) plot_debug_energy_compare() (in module nsphere_plot) plot_density() (in module nsphere_plot) plot_df_at_fixed_radius() (in module nsphere_plot) plot_dpsi_dr() (in module nsphere_plot) plot_drho_dpsi() (in module nsphere_plot) plot_energy_time() (in module nsphere_plot) plot_f_of_E() (in module nsphere_plot)

plot_lowestL_trajectories_3panel() (in module nsphere_plot) plot_mass_enclosed() (in module nsphere_plot) plot_nsphere_histograms() (in module nsphere_plot) plot_particles_histograms() (in module nsphere_plot) plot_psi() (in module nsphere_plot) plot_single_trajectory() (in module nsphere_plot) plot_tangential_velocity_histogram() (in module nsphere_plot) plot_total_energy_diagnostics() (in module nsphere_plot) plot_trajectories() (in module nsphere_plot) potential_function_t (C++ type) potential_hernquist (C++ function) preprocess_phase_space_file() (in module nsphere_plot) print_footer() (in module nsphere_plot) print_header() (in module nsphere_plot) print_status() (in module nsphere_plot) printUsage (C++ function) process_animation_frame() (in module nsphere_plot) process_particle_data() (in module nsphere_plot) process_profile_plots() (in module nsphere_plot) process_rank_file() (in module nsphere_plot) process_rank_file_for_1d_anim() (in module nsphere_plot) process_rank_files() (in module nsphere_plot) process_single_rank_file_for_histogram() (in module nsphere_plot) process_sorted_energy() (in module nsphere_plot) process_sorted_energy_file() (in module nsphere_plot) process_trajectory_energy_plots() (in module nsphere_plot) process_trajectory_plots() (in module nsphere_plot) process_unsorted_rank_file() (in module nsphere_plot) process_variable_histograms() (in module nsphere_plot) prompt_yes_no (C++ function) Psiintegrand (C++ function) Psiintegrand_params (C++ struct) Psiintegrand_params::massintegrand_func (C++ member) Psiintegrand_params::params_for_massintegrand (C++ member)

Q

QUAD_CACHE (C macro), [1] quadsort (C++ function) quadsort_parallel_sort (C++ function)

quadsort_prim (C++ function) quadsort_size (C++ function) quadsort_wrapper (C++ function)

R

R_block (C++ member) RADIX_BITS (C macro) RADIX_MASK (C macro) RADIX_SIZE (C macro) Rank_block (C++ member) RC (C macro) RC_NFW_DEFAULT (C macro) read_initial_conditions (C++ function) read_lastparams() (in module nsphere_plot) readInitFilename (C++ member)

reassign_orig_ids_with_rank (C++ function) render_density_frame() (in module nsphere_plot) render_mass_frame() (in module nsphere_plot) render_phase_frame() (in module nsphere_plot) render_psi_frame() (in module nsphere_plot) retrieve_all_particle_phi_snapshot (C++ function) retrieve_all_particle_snapshot (C++ function) RrPsiPair (C++ struct) RrPsiPair::psi (C++ member) RrPsiPair::rr (C++ member) run_main() (in module nsphere_plot)

S

safe_load_and_filter() (in module nsphere_plot) safe_load_and_filter_10() (in module nsphere_plot) safe_load_and_filter_10_bin() (in module nsphere_plot) safe_load_and_filter_bin() (in module nsphere_plot) safe_load_particle_ids_bin() (in module nsphere_plot) save_chosen_particles (C++ function) scatter_count_block (C++ member) select_tqdm_format() (in module nsphere_plot) setup_file_paths() (in module nsphere_plot) (nsphere_plot.Configuration method) setup_global_parameters() (in module nsphere_plot) setup_logging() (in module nsphere_plot) show_cursor() (in module nsphere_plot) show_progress_delay() (in module nsphere_plot)

show_section_delay() (in module nsphere_plot) sigmatotal (C++ function) signal_handler() (in module nsphere_plot) skip_file_writes (C++ member) sort_by_rad (C++ function) sort_particles (C++ function) sort_particles_with_alg (C++ function) sort_rr_psi_arrays (C++ function) sqr (C macro) start_combined_progress() (in module nsphere_plot) stdlib_qsort_wrapper (C++ function) store_debug_approxE (C++ function) store_debug_dynE_components (C++ function) suppress_stdout() (in module nsphere_plot) swap_branchless (C macro)

T

tail_branchless_merge (C macro) threevector (C++ struct) threevector::x (C++ member)

threevector::y (C++ member) threevector::z (C++ member) truncate_and_pad_string() (in module nsphere_plot) truncate_files_to_snapshot (C++ function)

U

update_combined_progress() (in module nsphere_plot) update_timer_energy_plots() (in module nsphere_plot)

use_closest_to_Lcompare (C++ member) use_identity_gravity (C++ member)

V

VAR (C macro), [1], [2], [3], [4], [5], [6], [7] VEL_CONV_SQ (C macro)

verify_sort_results (C++ function) Vrad_block (C++ member)

W

write_initial_conditions (C++ function)

writeInitFilename (C++ member)